If Windows rearranges your desktop when the resolution is changed and then changed back, I would kindly ask that you bring that issue up with Microsoft. That's really not on Uru.
Aside from that, as Paradox said, we have no way to change this game. It's old. At this point it's basically a retro game. Either you accept it the way it is or you'll have more fun playing other, more modern games -- the choice is yours, all we can do here is provide the game as-is, for those that still enjoy it.
![Smile :)](./images/smilies/icon_e_smile.gif)